2017
Bewick A. J., C. E. Niederhuth, L. Ji, N. A. Rohr, P. T. Griffin, J. Leebens-Mack, R. J. Schmitz (2017) The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants. Genome Biol 18(1):65 Link PDF
Niederhuth C. E., R. J. Schmitz (2017) Putting DNA methylation in context: from genomes to gene expression in plants. Biochim Biophys Acta. 1860(1): 149-56 Link PDF
2016
Niederhuth C. E., A. J. Bewick, L. Ji, M. S. Alabady, K. D. Kim, Q. Li, N. A. Rohr, A. Rambani, J. M. Burke, J. A. Udall, C. Egesi, J. Schmutz, J. Grimwood, S. A. Jackson, N. M. Springer and R. J. Schmitz (2016). “Widespread natural variation of DNA methylation within angiosperms.” Genome Biol 17(1): 194 Link PDF
Griffin P. T., C. E. Niederhuth, and R. J. Schmitz (2016) A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation. G3 (Genes Genomes Genetics) 6(9): 2773-2780 Link PDF
Bewick A. J., L. Ji, C. E. Niederhuth, E.-M. Willing, B. T. Hofmeister, X. Shi, L. Wang, Z. Lu, N. A. Rohr, B. Hartwig, C. Kiefer, R. B. Deal, J. Schmutz, J. Grimwood, H. Stroud, S. E. Jacobsen, K. Schneeberger, X. Zhang and R. J. Schmitz (2016). On the Origin and Evolutionary Consequences of Gene Body DNA Methylation. Proc Natl Acad Sci. 113 (32): 9111–9116 Link PDF
Bertioli, D. J., S. B. Cannon, L. Froenicke, G. Huang, A. D. Farmer, E. K. S. Cannon, X. Liu, D. Gao, J. Clevenger, S. Dash, L. Ren, M. C. Moretzsohn, K. Shirasawa, W. Huang, B. Vidigal, B. Abernathy, Y. Chu, C. E. Niederhuth, P. Umale, A. C. G. Araújo, A. Kozik, K. Do Kim, M. D. Burow, R. K. Varshney, X. Wang, X. Zhang, N. Barkley, P. M. Guimarães, S. Isobe, B. Guo, B. Liao, H. T. Stalker, R. J. Schmitz, B. E. Scheffler, S. C. M. Leal-Bertioli, X. Xun, S. A. Jackson, R. Michelmore, and P. Ozias-Akins (2016). The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics 48(4):438-46 Link PDF
2015
Li, J., J. Hou, L. Sun, J. M. Wilkins, Y. Lu, C. E. Niederhuth, B. R. Merideth, T. P. Mawhinney, V. V. Mossine, C. M. Greenlief, J. C. Walker, W. R. Folk, M. Hannink, D. B. Lubahn, J. A. Birchler, and J. Cheng (2015). From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. PLoS One 10(4): e0125000 Link PDF
Vlachogiannis, G., C. E. Niederhuth, S. Tuna, A. Stathopoulou, K. Viiri, D. G. de Rooij, R. G. Jenner, R. J. Schmitz, and S. K. Ooi (2015). The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Rep. 10(6): 944–956 Link PDF
2014
Lane, A. K., C. E. Niederhuth, L. Ji, and R. J. Schmitz (2014). pENCODE: a plant encyclopedia of DNA elements. Annu Rev Genet 48: 49-70 Link PDF
Niederhuth, C. E. and R. J. Schmitz (2014). Covering your bases: inheritance of DNA methylation in plant genomes. Mol Plant 7(3): 472-480 Link PDF
2013
Niederhuth, C. E., S. K. Cho, K. Seitz, and J. C. Walker (2013). Letting go is never easy: abscission and receptor-like protein kinases. J Integr Plant Biol 55(12): 1251-1263 Link PDF
Niederhuth, C. E., O. R. Patharkar and J. C. Walker (2013). Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq. BMC Genomics 14 Link PDF
2012
Valdivia, E. R., D. Chevalier, J. Sampedro, I. Taylor, C. E. Niederhuth, and J. C. Walker (2012). DVL genes play a role in the coordination of socket cell recruitment and differentiation. J Exp Bot 63(3): 1405-1412 Link PDF