Chad Niederhuth

Assistant Professor

Ph.D. Biological Sciences – University of Missouri
B.S. Agronomy – Iowa State Univesity
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Publications

2017

Bewick A. J., C. E. Niederhuth, L. Ji, N. A. Rohr, P. T. Griffin, J. Leebens-Mack, R. J. Schmitz (2017) The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants. Genome Biol 18(1):65.

Niederhuth C. E., R. J. Schmitz (2017) Putting DNA methylation in context: from genomes to gene expression in plants. Biochim Biophys Acta. 1860(1): 149-56.

2016

Niederhuth C. E., A. J. Bewick, L. Ji, M. S. Alabady, K. D. Kim, Q. Li, N. A. Rohr, A. Rambani, J. M. Burke, J. A. Udall, C. Egesi, J. Schmutz, J. Grimwood, S. A. Jackson, N. M. Springer and R. J. Schmitz (2016). “Widespread natural variation of DNA methylation within angiosperms.” Genome Biol 17(1): 194.

Griffin P. T., C. E. Niederhuth, and R. J. Schmitz (2016) A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation. G3 (Genes Genomes Genetics) 6(9): 2773-2780.

Bewick A. J., L. Ji, C. E. Niederhuth, E.-M. Willing, B. T. Hofmeister, X. Shi, L. Wang, Z. Lu, N. A. Rohr, B. Hartwig, C. Kiefer, R. B. Deal, J. Schmutz, J. Grimwood, H. Stroud, S. E. Jacobsen, K. Schneeberger, X. Zhang and R. J. Schmitz (2016). On the Origin and Evolutionary Consequences of Gene Body DNA Methylation. Proc Natl Acad Sci. 113 (32): 9111–9116

Bertioli, D. J., S. B. Cannon, L. Froenicke, G. Huang, A. D. Farmer, E. K. S. Cannon, X. Liu, D. Gao, J. Clevenger, S. Dash, L. Ren, M. C. Moretzsohn, K. Shirasawa, W. Huang, B. Vidigal, B. Abernathy, Y. Chu, C. E. Niederhuth, P. Umale, A. C. G. Araújo, A. Kozik, K. Do Kim, M. D. Burow, R. K. Varshney, X. Wang, X. Zhang, N. Barkley, P. M. Guimarães, S. Isobe, B. Guo, B. Liao, H. T. Stalker, R. J. Schmitz, B. E. Scheffler, S. C. M. Leal-Bertioli, X. Xun, S. A. Jackson, R. Michelmore, and P. Ozias-Akins (2016). The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics 48(4):438-46

2015

Li, J., J. Hou, L. Sun, J. M. Wilkins, Y. Lu, C. E. Niederhuth, B. R. Merideth, T. P. Mawhinney, V. V. Mossine, C. M. Greenlief, J. C. Walker, W. R. Folk, M. Hannink, D. B. Lubahn, J. A. Birchler, and J. Cheng (2015). From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. PLoS One 10(4): e0125000.

Vlachogiannis, G., C. E. Niederhuth, S. Tuna, A. Stathopoulou, K. Viiri, D. G. de Rooij, R. G. Jenner, R. J. Schmitz, and S. K. Ooi (2015). The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Rep. 10(6): 944–956

2014

Lane, A. K., C. E. Niederhuth, L. Ji, and R. J. Schmitz (2014). pENCODE: a plant encyclopedia of DNA elements. Annu Rev Genet 48: 49-70.

Niederhuth, C. E. and R. J. Schmitz (2014). Covering your bases: inheritance of DNA methylation in plant genomes. Mol Plant 7(3): 472-480.

2013

Niederhuth, C. E., S. K. Cho, K. Seitz, and J. C. Walker (2013). Letting go is never easy: abscission and receptor-like protein kinases. J Integr Plant Biol 55(12): 1251-1263.

Niederhuth, C. E., O. R. Patharkar and J. C. Walker (2013). Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq. BMC Genomics 14.

2012

Valdivia, E. R., D. Chevalier, J. Sampedro, I. Taylor, C. E. Niederhuth, and J. C. Walker (2012). DVL genes play a role in the coordination of socket cell recruitment and differentiation. J Exp Bot 63(3): 1405-1412.